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Belyaeva E, Rubenstein A, Pierson SK, Dalldorf D, Frank D, Lim MS, Fajgenbaum DC, Sheila K Pierson . Bone marrow findings of idiopathic Multicentric Castleman disease: A histopathologic analysis and systematic literature review . Hematol Onco. 2022 Apr;40(2):191-201. doi: 10.1002/hon.2969. Epub 2022 Feb 18.
Liu, FK, Han R, Blair K, Kenst Z, Qin B, Upcin P, Worsdorfer CC, Midkiff J, Mudd E, Belyaeva E, Milligan NS, Dorison T, Wagner N, Bodem J, Dolken BH, Aktas BH, Vander Heide R, Yin XM, Kolls JK, Roy CJ, Rappaport J, Ergun S, Qin X. SARS-CoV-2 infects endothelial cells in vivo and in vitro. Front. Cell. Infect. Micriobiol. 11:701278, Published online July 6, 2021. DOI: 10.3389/fcimb.2021.701278, PMID: 34307198
* Tang CY, Wang H, Zhang Y, Wang Z, Zhu G, McVicar A, Li YP, Chen W. GPR125 positively regulates osteoclastogenesis potentially through AKT-NF-κB and MAPK signaling pathways. Int J Biol Sci. 2022 Mar 6;18(6):2392-2405. doi: 10.7150/ijbs.70620. PMID: 35414778; PMCID: PMC8990458.
*Zhang Y, Zuo T, McVicar A, Yang HL, Li YP, Chen W. Runx1 is a key regulator of articular cartilage homeostasis by orchestrating YAP, TGFβ, and Wnt signaling in articular cartilage formation and osteoarthritis. Bone Research. 2022 Oct 28;10(1):63. PMID: 36307389 PMCID: PMC9616925.
Nebeluk N, Bruno LN, Duke M, Craig R, Love G, Hunt JP, Marr A, Schoen J, Stuke L, Greiffenstein P, Smith AA. Proposed Treatment Algorithm for Invasive Fungal Infections in Trauma Patients. Surg Infect (Larchmt). 2022 Aug;23(6):550-557. doi: 10.1089/sur.2021.325. Epub 2022 Jun 8.PMID: 35675674
Dash S, Koksal AR, Dong L, Koksal AR. Commentary on fibrogenic signals persist in DAA-treated HCV patients after sustained virological response. ExRNA, 2022:4:7 (31March2022). doi:10.21037/exrna-21-33.
Ali Riza Koksal, Nunez Kelly, Paul Thevenot, Kyle Widmer, Leela Nayak, Martin Moehlen, Ari Cohen and Srikanta Dash. Impaired autophagy response in hepatocellular carcinoma enriches glypican-3 in exosomes, not in the microvesicles. Journal of Hepatocellular Carcinoma, 2022; Sept 7,9:959-972.
Safa F, Rasmussen T, Lobelle-Rich P, Collier S, Milligan N, Schmeig J, Schmid J, Wiewiorowski C, Totaro D, Brown TC, Satyavarapu I, Badoo M, Ungerleider N, Flemington EK, Safah H, Saba NS. Establishment and characterization of a new mantle cell lymphoma cell line with a NOTCH2 mutation, Arbo. eJHaem. 2022 Sep 20;3(4):1326-1329. doi: 10.1002/jha2.580.
Wang Y, Ungerleider N, Hoffman BA, Kara M, Farrell PJ, Flemington EK, Lee N, Tibbetts SA. A Polymorphism in the Epstein-Barr Virus EBER2 Noncoding RNA Drives In Vivo Expansion of Latently Infected B Cells. mBio. 2022 Jun 28;13(3):e0083622. doi: 10.1128/mbio.00836-22.
Melnik LI, Guha S, Ghimire J, Smither AR, Beddingfield BJ, Hoffmann AR, Sun L, Ungerleider NA, Baddoo MC, Flemington EK, Gallaher WR, Wimley WC, Garry RF. Ebola virus delta peptide is an enterotoxin. Cell Rep. 2022 Jan 4;38(1):110172. doi: 10.1016/j.celrep.2021.110172.
Stahl M, Li Q, Lynch K, Koletzko S, Mehta P, Gragert L, Norris J, Aronsson C, Lindfors K, Kurppa K, Ilonen J, Krischer J, Alkolkar B, She J, Ziegler A, Toppari J, Rewers M, Agardh D, Hagopian, W, Liu E, and the TEDDY Study Group. (2022) Incidence of Pediatric Celiac Disease Varies by Region. American Journal of Gastroenterology. 2022 Oct 10. DOI: 10.14309/ajg.0000000000002056
Olson T, Frost BF, Duke JL, Dribus M, Xie HM, Prudowsky ZD, Furutani E, Gudera J, Shah Y, Ferriola D, Xu E, He M, Zheng S, Nijim S, Lin P, Xu C, Nakano T, Oved JH, Carreno BM, Lee SJ, Monos DS, Shimamura A, Bertuch AA, Gragert L, Spellman SR, Babushok D (2022) Pathogenicity and impact of HLA class I alleles in aplastic anemia patients of different ethnicities. JCI Insight 2022 Oct 11;e163040. DOI: 10.1172/jci.insight.163040.
Gragert L , Kadatz M, Alcorn J, Stewart D, Gill J, Liwski R, Gebel H, Gill J, Lan J. (2022) ABO-Adjusted Calculated Panel Reactive Antibody (cPRA): A Unified Metric for Immunologic Compatibility in Kidney Transplantation. American Journal of Transplantation doi: 10.1111/ajt.17175.
Rushakoff J, Gragert L, Pando MJ, Huang E, Stewart D, Lindblad K, Zhang X, Patel JK, Kobashigawa J, Kransdorf EP. (2022) HLA Homozygosity and Sensitization in Kidney Transplant Candidates. Transplantation Direct 8, e1312.
Yu N, Askar M, Wadsworth K, Gragert L, Fernandez-Vina M. (2022) Current HLA Testing recommendations to support HCT. Human Immunology DOI: 10.1016/j.humimm.2022.04.008 PMID: 35798627
Ashman K, Zhuge H, Shanley E, Fox S, Halat S, Sholl A, Summa B, Brown JQ. Whole slide image data utilization informed by digital diagnosis patterns. J Pathol Inform. 2022 Jun 30;13:100113. doi: 10.1016/j.jpi.2022.100113. PMID: 36268057; PMCID: PMC9577055.
Lennerz JK, Pantanowitz L, Amin MB, Eltoum IE, Hameed MR, Kalof AN, Khanafshar E, Kunju LP, Lazenby AJ, Montone KT, Otis CN, Reid MD, Staats PN, Whitney-Miller CL, Abendroth CS, Aron M, Birdsong GG, Bleiweiss IJ, Bronner MP, Chapman J, Cipriani NA, de la Roza G, Esposito MJ, Fadare O, Ferrer K, Fletcher CD, Frishberg DP, Garcia FU, Geldenhuys L, Gill RM, Gui D, Halat S, Hameed O, Hornick JL, Huber AR, Jain D, Jhala N, Jorda M, Jorns JM, Kaplan J, Khalifa MA, Khan A, Kim GE, Lee EY, LiVolsi VA, Longacre T, Magi-Galluzzi C, McCall SJ, McPhaul L, Mehta V, Merzianu M, Miller SB, Molberg KH, Moreira AL, Naini BV, Nosé V, O'Toole K, Picken M, Prieto VG, Pullman JM, Quick CM, Reynolds JP, Rosenberg AE, Schnitt SJ, Schwartz MR, Sekosan M, Smith MT, Sohani A, Stowman A, Vanguri VK, Wang B, Watts JC, Wei S, Whitney K, Younes M, Zee S, Bracamonte ER. Ensuring remote diagnostics for pathologists: an open letter to the US Congress. Nat Med. 2022 Oct 20. doi: 10.1038/s41591-022-02040-6. Epub ahead of print. PMID: 36266514.
Sweeney PL, Jang A, Halat SK, Pal SK, Barata PC. Advanced papillary renal cell carcinoma: Epidemiology, genomic drivers, current therapies, and ongoing trials. Cancer Treat Res Commun. 2022 Sep 22;33:100639. doi: 10.1016/j.ctarc.2022.100639. Epub ahead of print. PMID: 36162322.
Utility of secretagogin as a marker for the diagnosis of lung neuroendocrine carcinoma. Baykara Y, Xiao Y, Yang D, Yakirevich E, Maleki S, Garcia-Moliner M, Wang LJ, Huang CK, Lu S. Virchows Arch. 2022 Jul;481(1):31-39. doi: 10.1007/s00428-022-03312-9. Epub 2022 Mar 31. PMID: 35357570
Wan Y, Slevin E, Koyama S, Huang CK, Shetty AK, Li X, Harrison K, Li T, Zhou B, Lorenzo SR, Zhang Y, Salinas JM, Xu W, Klaunig JE, Wu C, Tsukamoto H, Meng F. miR-34a regulates macrophage-associated inflammation and angiogenesis in alcohol induced liver injury. Hepatology Communication (In Press).
Hartono, A.B., Kang, H.J., Shi, L., Phipps, W. Ungerleider, N., Giardina, A., Chen, W., Spraggon, L. Somwar, R., Moroz, K., Drewry, D.H., Burow, M.E., Flemington, E., Ladanyi, M. and Lee, S.B. Salt-inducible kinase 1 is a potential therapeutic target in Desmoplastic small round cell tumor. 2022) Oncogenesis, 11, 18: PMID: 35443736.
Nguyen, K, Tran, MN, Rivera, A, Cheng, T, Windsor, GO, Chabot, AB, Cavanaugh, JE, Collins-Burow, BM, Lee, SB, Drewry, DH, Flaherty, PT. and Burow, ME. MAP3K family review and correlations with patient survival outcomes in various cancer types. 2022 Frontiers in Bioscience, 27:167. PMID 35638434.
Zhu G, Chen W, Tang CY, McVicar A, Edwards D, Wang J, McConnell M, Yang S, Li Y, Chang Z, Li YP. Knockout and Double Knockout of Ctsk and Mmp9 reveals a novel function of Ctsk as a regulator of gene expression in osteoclasts and bone homeostasis. Int J Biol Sci. 2022;18(14):5522-5538. PubMed PMID: 36147479; PubMed Central PMCID: PMC9461675 IF: 10.750
Vittori C, Jeansonne D, Yousefi H, Faia C, Lin Z, Reiss K, Peruzzi F. Mechanisms of miR-3189-3p-mediated inhibition of c-MYC translation in triple negative breast cancer. Cancer Cell Int. 2022 May 31;22(1):204.
Chen J, Barrett L, Lin Z, Kendrick S, Mu S, Dai L, Qin Z. Identification of natural compounds tubercidin and lycorine HCl against small-cell lung cancer and BCAT1 as a therapeutic target. J Cell Mol Med. 2022 May;26(9):2557-2565.
Toraih EA, Fawzy MS, Ning B, Zerfaoui M, Errami Y, Ruiz EM, Hussein MH, Haidari M, Bratton M, Tortelote GG, Hilliard S, Nilubol N, Russell JO, Shama MA, El-Dahr SS, Moroz K, Hu T, Kandil E. A miRNA-Based Prognostic Model to Trace Thyroid Cancer Recurrence. Cancers (Basel). 2022 Aug 26;14(17):4128. doi: 10.3390/cancers14174128. PMID: 36077665
Matossian MD, Chang T, Wright MK, Burks HE, Elliott S, Sabol RA, Wathieu H, Windsor GO, Alzoubi MS, King CT, Bursavich JB, Ham AM, Savoie JJ, Nguyen K, Baddoo M, Flemington E, Sirenko O, Cromwell EF, Hebert KL, Lau F, Izadpanah R, Brown H, Sinha S, Zabaleta J, Riker AI, Moroz K, Miele L, Zea AH, Ochoa A, Bunnell BA, Collins-Burow BM, Martin EC, Burow ME. In-depth characterization of a new patient-derived xenograft model for metaplastic breast carcinoma to identify viable biologic targets and patterns of matrix evolution within rare tumor types. Clin Transl Oncol. 2022 Jan;24(1):127-144. doi: 10.1007/s12094-021-02677-8. PMID: 34370182
O’Grady T , Njock MS, Lion M, Bruyr J, Mariavelle E, Galvan B, Boeckx A, Struman I andDequiedt F. 2022. Sorting and packaging of RNA into extracellular vesicles shape Intracellular transcript levels. BMC Biology 20:72.
Njock MS*, O’Grady T*, Nivelles O, Lion M, Jacques S, Cambier M, Herkenne S, Muller F, Christian A, Remacle C, Guiot J, Rahmouni S, Dequiedt F and Struman I. 2022. Endothelial extracellular vesicles promote tumour growth by tumour-associated macrophage reprogramming. Journal of Extracellular Vesicles. 11:e12228. *co-first authors
Pi L , Sun C, Jn-Simon N, Basha S, Thomas H, Figueroa V, Zarrinpar A, Cao Q, Petersen BE. CCN2/CTGF Promotes Liver Fibrosis Through Crosstalk with the Slit2/Robo Signaling. Journal of Cell Communication and Signaling. ( https://doi.org/10.1007/s12079-022-00713-y ).
Zhou J, Sun C, Yang L, Wang J, Jn-Simon N, Zhou C, Bryant A, Cao Q, Li C, Petersen B, Pi L. Liver regeneration and ethanol detoxification: A new link in YAP regulation of ALDH1A1 during alcohol-related hepatocyte damage. The FASEB J. 2022 Apr;36(4):e22224. doi: 10.1096/fj.202101686R. PMID: 35218575.
Li S, Sun X, Chen H, Liang J, Sun X, Chen M, Pi L, Ying Z, Ren B, Zhang L, Cao Q. Deletion of Interleukin 1 Receptor-Associated Kinase 1 Improves TLR4/STAT1/PPARγ-Cd36 Signaling-Mediated Alcoholic Fatty Liver. Advanced Research in Gastroenterology & Hepatology. 2022 January; 18(2):1-9. doi: 10.19080/ARGH.2021.18.555983.
IftikharR, PenroseH, King K, Kim Y, Rouiz, E, Kandil E, Machado H, Savkovic SD.FOXO3 Expression in Macrophages Is Lowered by a High-Fat Diet and Regulates Colonic Inflammation and Tumorigenesis. 2022 Metabolites. DOI: 10.3390/metabo12030250
Safa F, Rasmussen T, Lobelle-Rich P, Collier S, Milligan N, Schmeig J, Collier S, Milligan N, Schmid J, Wiewiorowski C, Totaro D, Brown TC, Satyavarapu I, Badoo M, Ungerleider N, Flemington, Safah H, Saba N. Establishment and characterization of a new mantle cell lymphoma cell line with a NOTCH2 mutation, Arbo. eJHaem. 2022;14. https://doi.org/10.1002/jha2.580
Tian D , Lin Z, Kriner EM, Esneault DJ, Tran J, DeVoto JC, Okami N, Greenberg R, Yanofsky S, Ratnayaka S, Tran N, Livaccari M, Lampp M, Wang N, Tim S, Norton P, Scott J, Hu TY, Garry R, Hamm L, Delafontaine P,Yin XM. Authors' Reply. J Mol Diagn. 2022 Jan;24(1):103.
Di T , Lin Z, Kriner E, Esneault D, Tran J, Devoto N, Okami R, Greenberg S, Yanofsky S. Ratnayaka S, Tran N, Livaccari M, Lampp M, Wang N, Tim S, Norton P, Scott J, Hu TY, Garry R, Hamm L, Delafontaine P, Yin XM. Ct values of SARS-Cov2 assay does not predict viral transmissibility in college students. J. Molecular Diagnostics. 23(9): 1079-1084, 2021. Authors’ Reply: 24(1): 103, 2022.
Ning B, Youngquist BM, Li DD, Lyon CJ, Zelanzny A, Maness NJ, Tian D, Hu TY. Rapid detection of multiple SARS-CoV-2 variants of concern by PAM-targeting mutations. Cell Rep Methods, 2022 Feb 28;2(2):100173. doi: 10.1016/j.crmeth.2022.100173. Epub 2022 Feb 7.
Ashkan Shahbandi, Fang-Yen Chiu, Nathan A. Ungerleider, Raegan Kvadas, Zeinab Mheidly, Meijuan J. S. Sun, Di Tian, Daniel A. Waizman, Ashlyn Y. Anderson, Heather L. Machado, Zachary F. Pursell, Sonia G. Rao & James G. Jackson. Breast cancer cells survive chemotherapy by activating targetable
Ge D, O’Brien MJ, Savoie FH, Gimble JM, Qu Z Gilbert M, Clark-Patterson GL, Schuster JD, Miller KS, Wang A, Myers L, Zongbing Y. Human adipose-derived stromal/stem cells expressing doublecortin improve cartilage repair in rabbits and monkeys. NPJ Regen Med. 2021 Nov 30;6(1):82
Rao Z, Wang A, Liu W, Yin H, Li J, Tang LSL, Wu W, Shi W. Mammary Paget Disease With Melanocytic Proliferation Mimicking Malignant Melanoma in situ. Front Med (Lausanne). 2022 Mar 21;9:839954.
Ma W and Wu T. METTL3-Mediated m6A Modification Links Liver Homeostasis and Pathology . Am J Pathol. 2022 Jan;192(1):18-20. PMID: 34774849
Ma W and Wu T. RNA m6A modification in liver biology and its implication in hepatic diseases and carcinogenesis. Am J Physiol Cell Physiol. 2022 Oct 1;323(4):C1190-C1205. PMID: 36036444
Zhang J , Chen W, Ma W, Song K, Lee SB, Han C, Wu T. Epigenetic Silencing of 15-Hydroxyprostaglandin Dehydrogenase by Histone Methyltransferase EHMT2/G9a in Cholangiocarcinoma.Mol Cancer Res. 2022, 20(3):350-360. PMID: 34880125
Yan, S. (2022). "Role of TFEB in Autophagy and the Pathogenesis of Liver Diseases." Biomolecules 12(5): 672.
Yan S , Zhou J, Zhang H, Lin Z, Khambu B, Liu G, Ma M, Chen X, Chalasani N, Yin XM. Promotion of Diet-induced Obesity and Metabolic Syndromes by BID is Associated with Gut Microbiota. Hepatol Commun. 6(12):3349-3362. 2022
Huda, N., B. Khambu, G. Liu, H. Nakatsumi,S. Yan, X. Chen, M. Ma, Z. Dong, K. I. Nakayama and X.-M. Yin (2022). "Senescence Connects Autophagy Deficiency to Inflammation and Tumor Progression in the Liver." Cell Mol Gastroenterol Hepatol 14(2): 333-355.
Long, J. X. Luo, D. Fang, H. Song, W. Fang, H. Shan, P. Liu, B. Lu, X-M. Yin*, L. Hong*, M. Li *. Discovery of an autophagy inducer J3 to lower mutant huntingtin and alleviate Huntington’s disease-related phenotype. Cell & Bioscience. 12:167, 2022. Doi.org/10.1186/s13578-022-00906-3 (*: co-corresponding authors).
Saxena, R. M. Nassiri, X.-M. Yin, and N. Morral. Insights from a high-fat diet fed mouse model with a humanized liver. Plos One, 17 (5): e0268260, 2022. PMID: 35533183
Livingston, M.J., S. Shu, Y. Fan, Z. Li, Q. Jiao, X.-M. Yin, M. Venkatachalam and Z. Dong. Tubular cells produce FGF2 via autophagy after acute kidney injury leading to fibroblast activation and renal fibrosis. Autophagy, Published on line, 2022 May 1. doi: 10.1080/15548627.2022.2072054, PMID: 35491858
Elizaveta Belyaeva, M.D.
A Case Report with Severe Thrombocytopenia Induced by Axitinib. Koksal UI, Goffin J, Lewis B, Sartor OA, Belyaeva E, Socola F, Barata PC. Case Rep Hematol. 2020 Feb 7;2020:7520783. doi: 10.1155/2020/7520783. eCollection 2020.PMID: 32089908
SARS-CoV-2 Infects Endothelial Cells In Vivo and In Vitro. Liu F, Han K, Blair R, Kenst K, Qin Z, Upcin B, Wörsdörfer P, Midkiff CC, Mudd J, Belyaeva E, Milligan NS, Rorison TD, Wagner N, Bodem J, Dölken L, Aktas BH, Vander Heide RS, Yin XM, Kolls JK, Roy CJ, Rappaport J, Ergün S, Qin X. Front Cell Infect Microbiol. 2021 Jul 6;11:701278. doi: 10.3389/fcimb.2021.701278. eCollection 2021.PMID: 34307198
Wei Chen and Yi-Ping Li, PhD
Runx1 is a central regulator of osteogenesis for bone homeostasis by orchestrating BMP and WNT signaling pathways. Tang CY, Wu M, Zhao D, Edwards D, McVicar A, Luo Y, Zhu G, Wang Y, Zhou HD, Chen W, Li YP. PLoS Genet. 2021 Jan 21;17(1):e1009233. doi: 10.1371/journal.pgen.1009233.
Ryan Craig, MD, PhD
Ibrahim M, Chen R, Vegel A, Panse K, Bhyravabhotla K, Harris K, Craig R, Safah H, Saba NS, Socola F. Treatment of myeloid sarcoma without bone marrow involvement with gemtuzumab ozogamicin-containing regimen. Leuk Res. 2021 Jul;106:106583. doi: 10.1016/j.leukres.2021.106583. Epub 2021 Apr 22. PMID: 33906021
Srikanta Dash, Ph.D.
Daniel J Klionsky et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy, 2021: PMID;33634751.
Dong Lin, Venu Reddy, Hanadi Osman, Adriana Lopez, Sadeq Radhi, Srikanta Dash and Yucel Aydin. Additional inhibition of Wnt/b-catenin signaling by Metformin in DAA treatments as a novel therapeutic strategy for HCV-infected patients. Cells, 2021;10:
Yucel Aydin, Ali R Koksal, Venu Reddy, Dong Lin, Hanadi Osman, Zahra Heidari, Sadeq R Rhadhi, William C Wimley, Mansour Parsi, and Srikanta Dash. Extracellular vesicle release promotes viral replication during persistent HCV infection. Cells, 2021; 10 (5):984.
Yucel Aydin, Ali R, Lin Dong, John W. Scott, Paul Thevenot, Arie Cohenand Srikanta Dash. Experimental validation of novel glypican 3 exosomes for the detection of hepatocellular carcinoma in liver cirrhosis. J Hepatocellular Carcinoma, 2021;8:1579-1596.
Srikanta Dash, Ali Riza Koksal, Lin Dong. Editorial Commentary: Fibrogenic signals persist in DAA-treated HCV patients after sustained virological response. Extracellular RNA, 2021
Loren Gragert, Ph.D.
Schindler E, Dribus M, Duffy BF, Hock K, Farnsworth CW, Gragert L, Liu C. (2021) Human leukocyte antigen genetic polymorphism in patients with Coronavirus Disease 2019 in Midwestern United States. HLA 98(4): 370-379.
Copley H, Gragert L, Leach A, Kosmoliaptsis, V. (2021) Influence of HLA class II polymorphism on predicted cellular immunity against SARS-CoV-2 at the population and individual level. Frontiers in Immunology 12:6-8.
Israeli S, Gragert L, Maiers M, Louzoun Y. (2021) HLA Haplotype Frequency Estimation for Heterogeneous Populations Using a Graph-Based Imputation Algorithm. Human Immunology 82(10) 746-757.
Sajulga R, Madbouly A, Fingerson S, Gragert L, Bashyal P, Bolon YT, Maiers M. (2021) Predicting HLA-DPB1 Permissive Probabilities through a DPB1 Prediction Service towards the Optimization of HCT Donor Selection. Human Immunology 82(21) 903-911.
Mayor N, Wang T, Lee SJ, Kuxhausen M, Vierra-Green C, Barker DJ, Auletta J, Bhatt VR, Gadalla SM, Gragert L, Inamoto Y, Morris GP, Paczesny S, Reshef R, Ringden O, Shaw BE, Shaw P, Spellman S, Marsh SGE. (2021) Impact of Previously Unrecognized HLA Mismatches Using Ultrahigh Resolution Typing in Unrelated Donor Hematopoietic Cell Transplantation. Journal of Clinical Oncology 39:21 2397-2409.
Story, MS, Wang T, Bhatt VR, Battiwalla M, Badawy SM, Kamoun M, Gragert L, Brown V, Baxter-Lowe LA, Marsh SGE, Gadalla SM, Schetelig J, Mytilineos J, Miklos D, Waller E, Kuxhausen M, Spellman S, Lee S, Armistead PM (2021) Genetics of HLA peptide presentation, and impact on outcomes in HLA-matched allo-HCT. Transplantation and Cellular Therapy 27:7 591-599.
Kransdorf E, Pando M, Stewart D, Lindblad K, Patel J, Kim I, Zhang X, Maiers M, Kobashigawa J, Gragert L. (2021) Stem Cell Donor HLA Typing Improves CPRA in Kidney Allocation. American Journal of Transplantation 21(1) 138-147.
Erik Flemington, PhD
Elevated ATGL in colon cancer cells and cancer stem cells promotes metabolic and tumorigenic reprogramming reinforced by obesity. Iftikhar R, Penrose HM, King AN, Samudre JS, Collins ME, Hartono AB, Lee SB, Lau F, Baddoo M, Flemington EF, Crawford SE, Savkovic SD. Oncogenesis. 2021 Nov 29;10(11):82. doi: 10.1038/s41389-021-00373-4.PMID: 34845203
SON drives oncogenic RNA splicing in glioblastoma by regulating PTBP1/PTBP2 switching and RBFOX2 activity. Kim JH, Jeong K, Li J, Murphy JM, Vukadin L, Stone JK, Richard A, Tran J, Gillespie GY, Flemington EK, Sobol RW, Lim SS, Ahn EE. Nat Commun. 2021 Sep 21;12(1):5551. doi: 10.1038/s41467-021-25892-x.PMID: 34548489
EBV miRNAs are potent effectors of tumor cell transcriptome remodeling in promoting immune escape. Ungerleider N, Bullard W, Kara M, Wang X, Roberts C, Renne R, Tibbetts S, Flemington EK. PLoS Pathog 2021 May 6;17(5):e1009217. doi: 10.1371/journal.ppat.1009217. eCollection 2021 May.PMID: 33956915
Ulcerative colitis immune cell landscapes and differentially expressed gene signatures determine novel regulators and predict clinical response to biologic therapy. Penrose HM, Iftikhar R, Collins ME, Toraih E, Ruiz E, Ungerleider N, Nakhoul H, Flemington EF, Kandil E, Shah SB, Savkovic SD. Sci Rep. 2021 Apr 27;11(1):9010. doi: 10.1038/s41598-021-88489-w.PMID: 33907256
Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels. Chandra PK, Cikic S, Baddoo MC, Rutkai I, Guidry JJ, Flemington EK, Katakam PV, Busija DW. J Cereb Blood Flow Metab. 2021 Sep;41(9):2311-2328. doi: 10.1177/0271678X21999553. Epub 2021 Mar 9.PMID: 33715494
Increased transcription and high translation efficiency lead to accumulation of androgen receptor splice variant after androgen deprivation therapy. Ma T, Bai S, Qi Y, Zhan Y, Ungerleider N, Zhang DY, Neklesa T, Corey E, Dehm SM, Zhang K, *Flemington EK, *Dong Y. Cancer Lett. 2021 Apr 28;504:37-48. doi: 10.1016/j.canlet.2020.12.037. Epub 2021 Feb 6.PMID: 33556543
Data of relative mRNA and protein abundances of androgen receptor splice variants in castration-resistant prostate cancer. Ma T, Ungerleider N, Zhang DY, Corey E, *Flemington EK, *Dong Y. Data Brief. 2021 Jan 18;34:106774. doi: 10.1016/j.dib.2021.106774. eCollection 2021 Feb.PMID: 33537376
Transcriptional signatures of Zika virus infection in astrocytes. Schouest B, Peterson TA, Szeltner DM, Scheef EA, Baddoo M, Ungerleider N, Flemington EK, MacLean AG, Maness NJ. J Neurovirol. 2021 Feb;27(1):116-125. doi: 10.1007/s13365-020-00931-3. Epub 2021 Jan 6.PMID: 33405202
SON inhibits megakaryocytic differentiation via repressing RUNX1 and the megakaryocytic gene expression program in acute megakaryoblastic leukemia. Vukadin L, Kim JH, Park EY, Stone JK, Ungerleider N, Baddoo MC, Kong HK, Richard A, Tran J, Giannini H, Flemington EK, Lim SS, Ahn EE. Cancer Gene Ther. 2021 Sep;28(9):1000-1015. doi: 10.1038/s41417-020-00262-9. Epub 2020 Nov 27.PMID: 33247227
Bilon Khambu, PhD
Klionsky, D.J. …… B. Khambu, ….. et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy 2021 Feb 8;1-382. doi: 10.1080/15548627.2020.1797280. Online ahead of print.
Yan, S. B. Khambu, X. Chen, Z. Dong, G. Guo, and X.-M. Yin. Hepatic autophagy deficiency remodels gut microbiota for adaptive protection via FGF15-FGFR4 signaling. Cellular and Molecular Gastroenterology and Hepatology. 11: 973-997,2021. https://doi.org/10.1016/j.jcmgh.2020.10.011. PMID: 33127558
Zhen Lin, PhD
Nanbo A, Furuyama W, Lin Z. RNA Virus-Encoded miRNAs: Current Insights and Future Challenges. Frontiers in Microbiology. 2021;12:679210. Published 2021 Jun 24. doi:10.3389/fmicb.2021.679210
Tian D, Lin Z, Kriner EM, Esneault DJ, Tran J, DeVoto JC, Okami N, Greenberg R, Yanofsky S, Ratnayaka S, Tran N, Livaccari M, Lampp M, Wang N, Tim S, Norton P, Scott J, Hu TY, Garry R, Hamm L, Delafontaine P, Yin XM. Ct Values Do not Predict SARS-CoV-2 Transmissibility in College Students. J Mol Diagn. 2021 Jun 5:S1525-1578(21)00163-X. doi: 10.1016/j.jmoldx.2021.05.012.
Becnel D, Abdelghani R, Nanbo A, Avilala J, Kahn J, Li L, Lin Z. Pathogenic Role of Epstein-Barr Virus in Lung Cancers. Viruses. 2021 May. 13(5), 877
Avilala J, Becnel D, Abdelghani R, Nanbo A, Kahn J, Li L, Lin Z. Role of virally encoded circular RNAs in the pathogenicity of human oncogenic viruses. Frontiers in Microbiology. 2021 April. 12:657036.
Del Valle L, Dai L, Lin HY, Lin Z, Chen J, Post SR, Qin Z. Role of EIF4G1 network in non-small cell lung cancers (NSCLC) cell survival and disease progression. J Cell Mol Med. 2021 Feb 4. doi: 10.1111/jcmm.16307.
Ning B, Yu T, Zhang S, Huang Z, Tian D, Lin Z, Niu A, Golden N, Hensley K, Threeton B, Lyon CJ, Yin XM, Roy CJ, Saba NS, Rappaport J, Wei Q, Hu TY. A smartphone-read ultrasensitive and quantitative saliva test for COVID-19. Science Advances. 2021 Jan 8; 7(2):eabe3703. doi: 10.1126/sciadv.abe3703.
Sean Lee, Ph.D.
Ogura, K., Somwar, R., Hmeljak, J., Benayed, R., Boroujeni, A.M., Jungbluth, A., Magnan, H., Mattar, M.S., Khodos, I., Asher, M., Hartono, A.B., La Quaglia, M.P., de Stanchina, E., Pratilas, C., Lee, S.B., Spraggon, L. and Ladanyi, M. (2021) Therapeutic potential of NTRK3 inhibition in Desmoplastic Small Round Cell Tumor. Clinical Cancer Research 27:1184-1194. PMID: 33229458.
Matossian, M., Elliott, S., Van T. Hoang, Burks, H.E., Wright, M.K., Alzoubi, M., Yan, T., Chang, T., Wathieu, H., Windsor, G., Hartono, A.B., Lee, S.B., Zuercher, W.J., Drewry, D.H., Wells, C., Kapadia, N., Buechlein, A., Fang, F., Nephew, K.P., Collins-Burow, B.M. and Burow M.E. (2021) NEK5 activity regulates the mesenchymal and migratory phenotype in breast cancer cells. Breast Cancer Research and Treatment, 189:49-61. PMID: 33749548.
Iftikhar, R., Penrose, H.M., King, A.N., Samudre, J.S., Collins, M.E., Hartono, A.B., Lee, S.B., Lau, F., Badoo, M., Flemington, E.F., Crawford, S.E. and Savkovic, S.D. (2021) Elevated ATGL in colon cancer cells and cancer stem cells promotes metabolic and tumorigenic reprogramming reinforced by obesity. Oncogenesis, Nov 29;10(11):82. PMID: 34845203.
Smith, R.S., Odintsov, I., Liu, Z., Lui, A.J-W., Hayashi, T., Vojnic, M., Suehara, Y., Delasos, L., Mattar, M.S., Hmeljak, J., Ramirez, H.A., Shaw, M., Bui, G., Gladstone, E., Kunte, S., Magnan, H., Khodos, I., de Stanchina, E., La Quaglia, M.P., Yao, J., Lae, M., Lee, S.B., Spraggon, L., Pratilas, C.A., Ladanyi, M. and Somwar, R. (2021) Novel patient-derived models of DSRCT enable validation of ERBB signaling as a potential therapeutic vulnerability. Disease Models & Mechanisms, online ahead of print, PMID: 34841430.
Zhang, J., Chen, W., Ma, W., Song, K., Lee, S.B., Han, C. and Wu. T. Epigenetic silencing of 15-hydroxyprostaglandin dehydrogenase by histone methyltransferase EHMT2/G9a in cholangiocarcinoma. (2021) Molecular Cancer Research, Accepted, in print.
Krzysztof Moroz, M.D.
Toraih EA, Fawzy MS, Hussein MH, El-Labban MM, Ruiz EML, Attia AA, Halat S, Moroz K, Errami Y, Zerfaoui M, Kandil E. MicroRNA-Based Risk Score for Predicting Tumor Progression Following Radioactive Iodine Ablation in Well-Differentiated Thyroid Cancer Patients: A Propensity-Score Matched Analysis. Cancers (Basel). 2021 Sep 16;13(18):4649. doi: 10.3390/cancers13184649. PMID: 34572876
Aydin Y, Chedid M, Chava S, Danielle Williams D, Liu S, Hagedorn CH, Sumitran-Holgersson S, Reiss K, Moroz K, Lu H, Balart LA, Dash S. Retraction Note: Activation of PERK-Nrf2 oncogenic signaling promotes Mdm2-mediated Rb degradation in persistently infected HCV culture. Sci Rep. 2021 Sep 1;11(1):17779. doi: 10.1038/s41598-021-97265-9. PMID: 34471176
Matossian MD, Chang T, Wright MK, Burks HE, Elliott S, Sabol RA, Wathieu H, Windsor GO, Alzoubi MS, King CT, Bursavich JB, Ham AM, Savoie JJ, Nguyen K, Baddoo M, Flemington E, Sirenko O, Cromwell EF, Hebert KL, Lau F, Izadpanah R, Brown H, Sinha S, Zabaleta J, Riker AI, Moroz K, Miele L, Zea AH, Ochoa A, Bunnell BA, Collins-Burow BM, Martin EC, Burow ME. In-depth characterization of a new patient-derived xenograft model for metaplastic breast carcinoma to identify viable biologic targets and patterns of matrix evolution within rare tumor types. Clin Transl Oncol. 2021 Aug 9. doi: 10.1007/s12094-021-02677-8. Online ahead of print. PMID: 34370182
Liya Pi, PhD
Chen M, Sun X, Wei W, Cucarella C, Martín-Sanz P, Casado M, Pi L, Ren B, Cao Q. Hepatic COX-2 expression protects mice from an alcohol-high fat diet-induced metabolic disorder by involving protein acetylation related energy metabolism. Alcohol. 2021 92:41-52.
RRY Inhibits Amyloid-β1-42 Peptide Aggregation and Neurotoxicity. Sun X, Duan S, Cao A, Villagomez B, Lin R, Chen H, Pi L, Ren B, Chen R, Chen M, Ying Z, Fang S, Cao Q. J Alzheimers Dis Rep. 2021 Jun 8;5(1):479-495. doi: 10.3233/ADR-210012. eCollection 2021.PMID:34368633
Suzana Savkovic, PhD
Elevated ATGL in colon cancer cells and cancer stem cells promotes metabolic and tumorigenic reprogramming reinforced by obesity. Iftikhar R, Penrose H, King K, Samudre J, Collins M, , Hartono A, Lee S, Lau F, Baddoo M, Flemington E, Crawford S, Savkovic SD., 2021 Oncogenesis. doi.org/10.1038/s41389-021-00373-4. *Blog for Nature community
Ulcerative colitis immune cell landscapes and differentially expressed gene signatures determine novel regulators and predict clinical response to biologic therapy. Penrose H, Iftikhar R, Collins M, Toraih E, Ruiz E, Ungerleider N, Nakhoul H, Flemington E, Kandil E, Shah S, Savkovic SD. Scientific Report. 2021; 11: 9010. doi: 10.1038/s41598-021-88489-wPMC8079702
Janet Schmid, M.D.
Xie J, Jang A, Vegel A, Hajja Y, Mouawad Y, Baghian A, Berbari B, Schmid J, Socola F, Safah H, Saba N. Successful treatment of “accelerated” chronic lymphocytic leukemia with single agent ibrutinib: A report of two cases.” Leukemia Research Reports, May 2021(https://doi.org/10.1016/.lrr.2021.100247) 2213-0489/c2021
J Xie, A Jang, M. Uemura, S. Nakazawa, T. Calimeri, A. JM Ferreri, S. R. Chen, J. L. Schmid, T. C. Brown, F. Socola, H. Safah, N. S. Saba. Systemic vs Intrathecal Central Nervous System Prophylaxis in Primary Adrenal/Renal Diffuse Large B-cell lymphoma: A Multi-institution Retrospective Analysis and Systematic Review. Leukemia Research Reports. Aug 3, 2021.
(https://doi.org/10.1016/j.lrr.2021.100263)
John Scott, M.D., Ph.D.
Yucel Aydin, Ali Riza Koksal, Paul Thevenot, Srinivas Chava1 Zahra Heidari, Dong Lin1 Tyler Sandow, Krzysztof Moroz, Mansour A Parsi, John Scott, Ari Cohen, Srikanta Dash: Experimental Validation of Novel Glypican 3 Exosomes for the Detection of Hepatocellular Carcinoma in Liver Cirrhosis: Journal of Hepatocellular Carcinoma 2021:8 1579–1596
Bo Ning, Zhen Huang, Brady M. Youngquist, John W Scott, Alex Niu, Christine M. Bojanowski, Kevin J. Zwezdaryk, Nakhle S. Saba, Jin Fan, Xiao-Ming Yin, Jing Cao, Christopher J. Lyon, Chen-zhong Li, Chad J. Roy, and Tony Y. Hu: Liposome-mediated detection of SARS-CoV-2 RNA-positive extracellular vesicles in plasma" Nature Nanotechnology: doi.org/10.1038/s41565-21-00939-8
DiTian, Zhen Lin, Ellie M. Kriner, Dalton J. Esneault, Jonathan Tran, Julia C. DeVoto, Naima Okami, Rachel Greenberg, Sarah Yanofsky, Swarnamala Ratnayaka, Nicholas Tran, Maeghan Livaccari, Marla Lampp, Noel Wang, Scott Tim, Patrick Norton, JohnScott, Y.Hu, Robert Garry, Patrice Delafontaine, Lee Hamm, Xiao-MingYin: SARS-CoV-2 Load does not Predict Transmissibility in College Students, https://doi.org/10.1101/2021.03.02.21252105
Zhen Huang,1,2,3 Bo Ning,1,3 He S. Yang,4 Brady M. Youngquist,1,3 Alex Niu,5 Christopher J. Lyon,1,3 Brandon J. Beddingfield,6 Alyssa C. Fears,6 Chandler H. Monk,7 Amelie E. Murrell,7 Samantha J. Bilton,7 Joshua P. Linhuber,7 Elizabeth B. Norton,7 Monika L. Dietrich,8 Jim Yee,4 Weihua Lai,2John W. Scott,9Xiao-Ming Yin,9 Jay Rappaport,7,10 James E. Robinson,8 Nakhle S. Saba,5 Chad J. Roy,6,7 Kevin J. Zwezdaryk,7 Zhen Zhao,4 and Tony Y. Hu1,3 Sensitive tracking of viral RNA in plasma through all stages of SARS-CoV-2 infection. J Clin Invest 2021;131(7) e146031
Di Tian, M.D., Ph.D.
Ning B, Yu T, Zhang S, Huang Z, Tian D, Lin Z, Niu A, Golden N, Hensley K, Threeton B, Lyon CJ, Yin XM, Roy CJ, Saba NS, Rappaport J, Wei Q, Hu TY. A smartphone-read ultrasensitive and quantitative saliva test for COVID-19. Sci Adv. 2020 Dec 11:eabe3703. doi: 10.1126/sciadv.abe3703. 2021.
Tian D, Lin Z, Kriner EM, Esneault DJ, Tran J, DeVoto JC, Okami N, Greenberg R, Yanofsky S, Ratnayaka S, Tran N, Livaccari M, Lampp M, Wang N, Tim S, Norton P, Scott J, Hu TY, Garry R, Hamm L, Delafontaine P, Yin XM. Ct Values Do not Predict SARS-CoV-2 Transmissibility in College Students. J Molecular Diagnosis. Jun 5;S1525-1578(21)00163-X. doi: 10.1016/j. jmoldx.2021.05.012. 2021
Arnaud C. Drouin, Marc Theberge, Sharon Liu, Allison Smither, Shelby Flaherty, Mark Zeller, Gregory P. Geba, Peter Reynaud, W. Benjamin Rothwell, Alfred P. Luk, Di Tian, Matthew L. Boisen, Luis M. Branco, Kristian G. Andersen, James E. Robinson, Robert F. Garry, Dahlene N. Fusco. Successful Clearance of 300 Day SARS-CoV-2 Infection in a Subject with B-Cell Depletion Associated Prolonged (B-DEAP) COVID by REGEN-COV Anti-Spike Monoclonal Antibody Cocktail. Viruses. 13(7): 1202 doi: 10.3390/v13071202. 2021.
Snarski P, Sukhanov S, Yoshida T, Higashi Y, Danchuk S, Chandrasekar B, Tian D, Rivera-Lopez V, Delafontaine P. Macrophage-Specific IGF-1 Overexpression Reduces CXCL12 Chemokine Levels and Suppresses Atherosclerotic Burden in Apoe-Deficient Mice. Arterioscler Thromb Vasc Biol. ATVBAHA121316090. doi: 10.1161/ATVBAHA.121.316090. 2021.
Tong Wu, M.D., Ph.D.
Ma W and Wu T. METTL3-Mediated m6A Modification Links Liver Homeostasis and Pathology. Am J Pathol 2021 Nov 11;S0002-9440(21)00473-9. doi: 10.1016/j.ajpath.2021.10.015. PMID: 34774849
Zhang J*, Chen W, Ma W, Song K, Lee S, Han C, Wu T*. Epigenetic Silencing of 15-Hydroxyprostaglandin Dehydrogenase by Histone Methyltransferase EHMT2/G9a in Cholangiocarcinoma. Mol Cancer Res. 2021 Dec 8:molcanres.0536.2021. doi: 10.1158/1541-7786.MCR-21-0536. Epub ahead of print. PMID: 34880125. *corresponding authors.
Shengmin Yan, PhD
Yan, S. B. Khambu, X. Chen, Z. Dong, G. Guo, and X.-M. Yin. Hepatic autophagy deficiency remodels gut microbiota for adaptive protection via FGF15-FGFR4 signaling. Cellular and Molecular Gastroenterology and Hepatology. 11: 973-997,2021. https://doi.org/10.1016/j.jcmgh.2020.10.011. PMID: 33127558
Yan, S, and X.-M. Yin. Gut microbiome in liver pathophysiology and cholestatic liver disease. Liver Research. Published online, Aug. 2021. https://doi.org/10.1016/j.livres.2021.08.001
Xiao-Ming Yin, M.D., Ph.D.
Wang, Y. J. Zhu, Z. Liu, S. Shu, Y. Fu, Y. Liu, J. Cai, C. Tang, Y. Liu, X. Yin, Z. Dong. The PINK1/PARK2/optineurin pathway of mitophagy is activated for protection in septic acute kidney injury. Redox Biology. 38:101767, 2021,
Yan, S. B. Khambu, X. Chen, Z. Dong, G. Guo, and X.-M. Yin. Hepatic autophagy deficiency remodels gut microbiota for adaptive protection via FGF15-FGFR4 signaling. Cellular and Molecular Gastroenterology and Hepatology. 11: 973-997,2021.
Ning, B., T. Yu, S. Zhang, Z. Huang, D. Tian, Z. Lin, A. Niu, N. Golden, C. Lyon, A. Drouin, D. Fusco, X-M. Yin, N. Saba, J. Rapaport, Q. Wei and T. Hu. A smartphone-read ultrasensitive and quantitative saliva test for COVID-19. Science Advances. 8;7(2):eabe3703, 2021
Huang Z, Ning B, Yang HS, Youngquist BM, Niu A, Lyon CJ, Beddingfield BJ, Fears AC, Monk CH, Murrell AE, Bilton SJ, Linhuber JP, Norton EB, Dietrich ML, Yee JK, Lai W, Scott JW, Yin X-M, Rappaport J, Robinson JE, Saba NS, Roy CJ, Zwezdaryk KJ, Zhao Z, Hu TY, Sensitive tracking of circulating viral RNA through all stages of SARS-CoV-2 infection. J. Clin. Inv. 2021 Feb 9:146031.
Di, T, Z. Lin, E. Kriner, D. Esneault, J. Tran, J. Devoto, N. Okami, R. Greenberg, S. Yanofsky, S. Ratnayaka, N. Tran, M. Livaccari, M. Lampp, N. Wang, S. Tim, P. Norton, J. Scott, T. Y. HU, R. Garry, L. Hamm, P. Delafontaine, X-M. Yin. Ct values of SARS-Cov2 assay does not predict viral transmissibility in college students. J. Molecular Diagnostics. Accepted. May 27, 2021
Liu, F, K. Han, R. Blair, K. Kenst, Z. Qin, B. Upcin, P. Worsdorfer, C. C. Midkiff, J. Mudd, E. Belyaeva, N. S. Milligan, T. Dorison, N. Wagner, J. Bodem, L. Dolken, B. H. Aktas, R. Vander Heide, X.-M. Yin, J. K. Kolls, C. J. Roy, J. Rappaport, S. Ergun, and X. Qin. SARS-CoV-2 infects endothelial cells in vivo and in vitro. Front. Cell. Infect. Micriobiol. Published on line July 6, 2021. DOI: 10.3389/fcimb.2021.701278
Ning, B., Z. Huang, B. M. Youngquist, J. W. Scott, A. Niu, C. M. Bojanowski, K. J. Zwezdaryk, N. S. Saba, J. Fan, X.-M. Yin, J. Cao, C. J. Lyon, C-z. Li, C. J. Roy and T. Y. Hu. Liposome-mediated detection of SARS-CoV-2 RNA-positive extracellular vesicles in plasma, Nature Nanotechnology, Published. July 22, 2021.
Reagan-Steiner, S., J. Bhatnagar, R. B. Martines, N.S. Milligan, C. Gisondo, F.B. Williams, E. Lee, L. Estetter, H Bullock, C.S. Goldsmith, P. Fair, J. hand, G. Richardson, k.R. Woodworth, T. Oduyebo, R. R. Galang, R. Phillips, E. Belyaeva, X.-M. Yin, D. Meaney-Delman, T. M. Uyeki, D. J. Roberts, S. R. Zaki. Detection of SARS-CoV-2 in neonatal autopsy tissues and placenta: insights into vertical transmission. Emerging Infectious Diseases, Accepted, 2021
Klionsky, D.J. …… X.-M. Yin, ….. et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy 2021 Feb 8;1-382. doi: 10.1080/15548627.2020.1797280. Online ahead of print.
Yan, S, and X.-M. Yin. Gut microbiome in liver pathophysiology and cholestatic liver disease. Liver Research. Published online, Aug. 2021. https://doi.org/10.1016/j.livres.2021.08.001
Lorene Yoxtheimer, M.D.
Gunning WT 3rd, Yoxtheimer L, Smith MR. Platelet Aggregation Assays Do Not Reliably Diagnose Platelet Delta Granule Storage Pool Deficiency. J Hematol. 2021;10(4):196-201. doi:10.14740/jh832
Jinqiang Zhang, Ph.D.
Zhang J*, Chen W, Ma W, Song K, Lee S, Han C, Wu T*. Epigenetic Silencing of 15-Hydroxyprostaglandin Dehydrogenase by Histone Methyltransferase EHMT2/G9a in Cholangiocarcinoma. Mol Cancer Res. 2021 Dec 8:molcanres.0536.2021. doi: 10.1158/1541-7786.MCR-21-0536. Epub ahead of print. PMID: 34880125. *corresponding authors.
Srikanta Dash, Yucel Aydin and Tong Wu. Invited Review: Integrated stress response in hepatitis C promotes Nrf2-mediated chaperone-mediated autophagy: a novel mechanism for host-microbe survival and HCC development in liver cirrhosis. Seminars in Cell and Developmental Biology, 2020;101:20-35.
Srikanta Dash, Yucel Aydin, Kyle E Widmer and Leela Nayak. Hepatocellular Carcinoma Mechanisms Associated with Chronic HCV Infection and the impact of Direct Acting Antiviral Treatment. Journal of Hepatocellular Carcinoma, 2020;7:1-32.
Sruti Chandra, Hoang Michael Nguyen,Kylar Wiltz, Nicholas Hall, Shanzay Chaudhry, George Olverson, Tarun Mandal, Srikanta Dash , Anup Kundu. Aptamer-functionalized Hybrid Nanoparticles to Enhance the Delivery of Doxorubicin into Breast Cancer Cells by Silencing P-glycoprotein. Journal of Cancer Treatment and Diagnosis, 2020;4(1):1-13.
Srikanta Dash and Yucel Aydin. Editorial: Innate immune control of HCV infection through the Jak-Stat signaling. Digestive Medicine Research, 2020 (in press).
Dong Lin, Venu Reddy, Hanadi Osman, Adriana Lopez, Sadeq Radhi, Srikanta Dash and Yucel Aydin. Metformin reverses b-catenin signaling caused by chronic HCV infection and HCV clearance by direct-acing antiviral agents. Scientific Report, 2020 (in press).
Nusrat Chowdhury, Shanzay Chowdhury, Nicholas Hall, George Olverson, Qian-Jin Zhang, Tarun Mandal, Srikanta Dash, Anup Kundu. Targeted delivery of doxorubicin liposome for Her-2 positive breast cancer treatment. American Association of Pharamceutical Scientist (AAPS PharmSciTech), 2020;21:202.
Huang Z, Tian D, Liu Y, Lin Z, Lyon CJ, Lai W, Fusco D, Drouin A, Yin, X, Hu T, Ning B. Ultra-sensitive and high-throughput CRISPR-p owered COVID-19 diagnosis. Biosensors & bioelectronics, 22 May 2020, 164:112316 PMID
Alger J, Cafferata ML, Alvarado T, Ciganda A, Corrales A, Desale H, Drouin A, Fusco D, Garcia J, Gibbons L, Harville E, Lopez W, Lorenzana I, Muñoz-Lara F, Palou E, Retes E, Sierra M, Stella C, Xiong X, Zambrano LI, Buekens P. Using prenatal blood samples to evaluate COVID-19 rapid serologic tests specificity to the Maternal and Child Health Journal (accepted for publication 7-09-2020). PMID
Alger J, Caferata ML, Alvarado T, Ciganda A, Corrales A, Desale H, Drouin A, Fusco D,Garcia J, Gibbons L, Harville E, Lopez W, Lorenzana I, Muñoz Lara F, Palou E, Retes E, Sierra M, Stella, C, Xiong X, Zambrano LI and Buekens P. Using Prenatal Blood Samples to Evaluate COVID 19 Rapid Serologic Tests Specificity. Maternal and Child Health Journal. 2020. 24, 1099-1103. doi: 10.1007/s10995-020-02981-9 PMID: 32671537
Yin Q, Strong MJ, Zhuang Y, Flemington EK, Kaminski N, de Andrade JA, Lasky JA. Assessment of viral RNA in idiopathic pulmonary fibrosis using RNA-seq. BMC Pulm Med. 2020 Apr 3;20(1):81. doi: 10.1186/s12890-020-1114-1. PMID: 32245461
Yadav S, Anbalagan M, Baddoo M, Chellamuthu VK, Mukhopadhyay S, Woods C, Jiang W, Moroz K, Flemington EK, Makridakis N. Somatic mutations in the DNA repairome in prostate cancers in African Americans and Caucasians. Oncogene. 2020 May;39(21):4299-4311. doi: 10.1038/s41388-020-1280-x. Epub 2020 Apr 16. PMID: 32300177
Zhang W, Dong Y, Sartor O, Flemington EK, Zhang K. SEER and Gene Expression Data Analysis Deciphers Racial Disparity Patterns in Prostate Cancer Mortality and the Public Health Implication. Sci Rep. 2020 Apr 22;10(1):6820. doi: 10.1038/s41598-020-63764-4. PMID: 32321981
Vukadin L, Kim JH, Park EY, Stone JK, Ungerleider N, Baddoo MC, Kong HK, Richard A, Tran J, Giannini H, Flemington EK, Lim SS, Ahn EE. SON inhibits megakaryocytic differentiation via repressing RUNX1 and the megakaryocytic gene expression program in acute megakaryoblastic leukemia. Cancer Gene Ther. 2020 Nov 27. doi: 10.1038/s41417-020-00262-9. Online ahead of print. PMID: 33247227
Schouest B, Peterson TA, Szeltner DM, Scheef EA, Baddoo M, Ungerleider N, Flemington EK, MacLean AG, Maness NJ. Transcriptional signatures of Zika virus infection in astrocytes. J Neurovirol. 2021 Jan 6. doi: 10.1007/s13365-020-00931-3. Online ahead of print. PMID: 33405202
Ungerleider, N, Bullard, W, Kara, M, Wang, X, Roberts, C, Renne, R, Tibbetts, S, Flemington, EK. EBV miRNAs are potent effectors of tumor cell transcriptome remodeling in promoting immune escape. bioRxiv 2020.12.21.423766; doi: https://doi.org/10.1101/2020.12.21.423766
Garner, S. (2020) Garner’s Guide to Gross Anatomy Volume 2: Gluteal Region and Lower Extremity. 1st ed. [eBook, Apple Books; Web App]
Garner, S. Teaching the PAs of the Future. The Pathologist. July 17, 2020 Sullivan, H, Gragert L, Smith G, Lindblad K, Gebel H, Bray R. (2020) A simple electronic tool for comparing amino acid sequences of HLA-DPB1 alleles. Human Immunology 81(8): 430-436.
Kaur N, Pinelli D, Kransdorf E, Pando M, Smith G, Murphey C, Kamoun M, Bray R, Tambur A, Gragert L. (2020) A blueprint for electronic utilization of ambiguous molecular HLA typing data in organ allocation systems and virtual crossmatch. Human Immunology 81(2-3) 65-72.
Copley H, Gragert L, Leach A, Kosmoliaptsis, V. (2020) Influence of HLA class II polymorphism on predicted cellular immunity against SARS-CoV-2 at the population and individual level. bioRxiv https://doi.org/10.1101/2020.12.24.424326 Prepints.
Sabol RA, Bubenzer V, Moroz K, Halat S, Dang A, Ferdinand K, Traylor A, Boyd C, Harris K. Image-Guided Intensity-Modulated Radiation Therapy for IgG4-Related Ophthalmic Disease. Case Rep Ophthalmol Med. 2020 Sep 5;2020:8873078. doi: 10.1155/2020/8873078. PMID: 32963860; PMCID: PMC7492922.
Ma W, Han C, Zhang J, Song K, Chen W and Wu T. The histone methyltransferase G9a promotes cholangiocarcinogenesis through regulation of the Hippo pathway kinase LATS2 and YAP signaling pathway. Hepatology 2020. 72(4): 1283-1297. PMID: 31990985.
Zhang J, Han C, Song K, Chen W, Ungerleider N, Yao L, Ma W and Wu T. The long noncoding RNA MALAT1 regulates TGFbeta/Smad signaling through formation of a lncRNA-protein complex with Samds, SETD2 and PPM1A in hepatic cells. PloS One 2020, 15(1): e0228160. PMID: 31995604.
Song K, Kwon H, Han C, Chen W, Zhang J, Ma W, Dash S, Gandhi CR and Wu T. Yes- associated protein in Kupffer cells enhances the production of pro-inflammatory cytokines and promotes the development of Nonalcoholic steatohepatitis Hepatology 2020, 72(1):72-87. PMID: 31610032.
Ning B, Yu T, Zhang S, Huang Z, Tian D, Lin Z, Niu A, Golden N, Hensley K, Threeton B, Lyon CJ, Yin XM, Roy CJ, Saba NS, Rappaport J, Wei Q, Hu TY. A smartphone-read ultrasensitive and quantitative saliva test for COVID-19. Sci Adv. 2020 Dec 11:eabe3703. doi: 10.1126/sciadv.abe3703. (impact factor 13.116)
Chen J*, Goyal N*, Dai L*, Lin Z*, Del Valle L, Zabaleta J, Liu J, Post S, Foroozesh M, Qin Z. Developing new ceramide analogs and identifying novel sphingolipid controlled genes against a virus-associated lymphoma. Blood. 2020Nov:136(19):2175-2187. doi: 10.1182/blood.2020005569. (*Co-first author).
Zhao M, Nanbo A, Becnel D, Qin Z, Morris GF, Li L, Lin Z*. Ubiquitin Modification of the Epstein-Barr Virus Immediate Early Transactivator Zta. J Virol. 2020 Oct: JVI.01298-20. doi: 10.1128/JVI.01298-20. PMID: 32847852. (*Corresponding author)
Thompson JW Jr, Mikolajewski AJ, Kissinger P, McCrossen P, Smither A, Chamarthi GD, Lin Z, Tian D. An Epidemiologic Study of COVID-19 Patients in a State Psychiatric Hospital: High Penetrance With Early CDC Guidelines. Psychiatr Serv. 2020 Oct 6:appips202000270. doi: 10.1176/appi.ps.202000270. PMID: 33019856.
Huang Z, Tian D, Liu Y, Lin Z, Lyon CJ, Lai W, Fusco D, Drouin A, Yin X, Hu T, Ning B. Ultra-sensitive and high-throughput CRISPR-powered COVID-19 diagnosis. Biosens Bioelectron. 2020 Sep 15;164:112316. doi:10.1016/j.bios.2020.112316.
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