Myeloid Neoplasm Sequencing Panel (NGS)

Myeloid leukemia covers a spectrum of diseases characterized by an abnormal increase in immature myeloid white blood cells including AML, CML, ALL, CLL and other leukemias.  These diseases are highly heterogeneous which requires fine risk stratification to get optimal clinical outcome of patients. Common initiating events for leukemia carcinogenesis are upregulation of survival genes and dysregulation of cell growth. Hotspot mutations are traditionally examined in single-gene or single-mutation assays. Due to the nature of these diseases, the simplex assays cannot efficiently characterize a complete profile of the disease or sensitively monitor residual diseases. Taking advantage of the multiplex technology Next-Generation Sequencing (NGS) as well as the growing molecular evidence in these diseases, NGS panels have been suggested and utilized in clinical societies, including multiple cancer guidelines established by National Comprehensive Cancer Network (NCCN). Our current NGS panel is using Thermofisher sequencing platform and QIAGEN QIAseq library construction chemistry to examine the following 64 genes for myeloid neoplasms.

ABL1

CBL

EGFR

IDH1

KMT2A

PHF6

SF1

STAG2

ASXL1

CBLB

ETV6

IDH2

KRAS

PRPF40B

SF3A1

SUZ12

ATM

CDKN2A

EZH2

IKZF1

MPL

PTEN

SF3B1

TET2

ATRX

CEBPA

FBXW7

JAK1

NF1

PTPN11

SH2B3

TP53

BCOR

CSF3R

FLT3

JAK2

NOTCH1

RAD21

SMARCB1

U2AF1

BCORL1

DAXX

GATA1

JAK3

NPM1

RB1

SMC1A

U2AF2

BRAF

DNMT3A

GNAS

KAT6A

NRAS

RUNX1

SMC3

WT1

CALR

EED

HRAS

KIT

PDGFRA

SETBP1

SRSF2

ZRSR2